YUYINBOBAO
11月12日,中国科学院昆明动物研究所研究员张国捷及其团队,联合深圳华大生命科学研究院、丹麦哥本哈根大学等多家单位,在Nature上以封面形式同期发表了两篇文章,报道了万种鸟类基因组计划第二阶段(科级别)的研究结果。该研究团队发表了363种鸟类基因组数据,同时通过这一数据建立了无参考序列下多基因组比对和分析的新方法,并基于这一新方法阐明高密度物种取样对生物多样性研究的重要性。
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无参的全基因组比对数据集为全面解析鸟类遗传多样性特征的演化历程和分子遗传机制提供了全新的切入点。在另一篇论文中,该研究团队借助这一算法的优势建立了更加完善的同源基因集合,并开发了一套鉴定任意演化分支特异获得和丢失序列的方法,从而完整描绘出鸟类物种谱系基因组动态演化图谱。研究发现,这些动态变化的基因组区域往往存在一些分支特异基因或调控元件,可能与物种特异性状的起源和演化有关。比如,雀形目鸟类基因组多出一个生长激素基因的拷贝。雀形目中的鸣禽丢失了CornulinBG视讯网基因,该基因所编码的蛋白主要位于食管和口腔上皮细胞,其缺失可能会引起食管上皮的粘弹性特性发生变化,进而使得食管上部直径可以产生快速变化来调整的声道,这可能与其多样化的纯音发声演化有关。
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